miRBase entry: mmu-mir-467a-1

Stem-loop mmu-mir-467a-1


Accession
MI0002402
Symbol
MGI: Mir467a-1
Description
Mus musculus mmu-mir-467a-1 precursor miRNA
Gene family
MIPF0000316; mir-467

Literature search
26 open access papers mention mmu-mir-467a-1
(106 sentences)

Sequence

78162 reads, 665 reads per million, 102 experiments
cugugugcgUAAGUGCCUGCAUGUAUAUGCGuguauauuuuaugCAUAUACAUACACACACCUACAcacacau
.((((((.(((.(((..((.(((((((((((((.......))))))))))))).))..))).))).)))))).

Structure
c      c   A   CC  C             ua 
 ugugug gUA GUG  UG AUGUAUAUGCGug  u
 |||||| ||| |||  || |||||||||||||  a
 acacac CAU CAC  AC UACAUAUACguau  u
u      A   C   AC  A             uu 


Annotation confidence High
Do you think this miRNA is real?
Comments
The sequence of miR-467 is of low complexity. The sequence maps exactly to several genomic positions, and many more with 1 or 2 substitutions. Confidence in this miRNA might therefore be reduced.

Genome context
chr2: 10476346-10476418 [+]
Clustered miRNAs
30 other miRNAs are < 10 kb from mmu-mir-467a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-467a-5p

Accession MIMAT0003409
Description Mus musculus mmu-miR-467a-5p mature miRNA
Sequence 10 - UAAGUGCCUGCAUGUAUAUGCG - 31
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature mmu-miR-467a-3p

Accession MIMAT0002108
Description Mus musculus mmu-miR-467a-3p mature miRNA
Sequence 45 - CAUAUACAUACACACACCUACA - 66
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PubMed ID: 16582102
    The expression profile of microRNAs in mouse embryos
    "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
    "Nucleic Acids Res (2006) 34:1765-1771

  5. PubMed ID: 15901636
    MicroRNA Mirn122a reduces expression of the posttranscriptionally regulated germ cell transition protein 2 (Tnp2) messenger RNA (mRNA) by mRNA cleavage
    "Yu Z, Raabe T, Hecht NB"
    "Biol Reprod (2005) 73:427-433