Stem-loop ptc-MIR478s

Accession

MI0002387

Description

Populus trichocarpa ptc-MIR478s precursor miRNA

Gene family

MIPF0000052; MIR478

Literature search

1 open access papers mention ptc-MIR478s
(2 sentences)

Sequence

ucucauuuuuagggauaaacguuaauguuuuagacgagucuccuaaauuuuagggacuaaugucauuuuUAACGUGUCUCCUAUUUUUAGGGAcc
((((.....(((((((..(((((((.......((((((((.(((((...)))))))))..))))....)))))))))).))))......))))..

Structure

--    -auuuu    -   aa       uguuuua    --    u     a 
  ucuc      uagg gau  acguuaa       gacg  aguc ccuaa  
  ||||      |||| |||  |||||||       ||||  |||| ||||| u
  AGGG      AUCC CUG  UGCAAUu       cugu  ucag ggauu  
cc    AUUUUU    U   --       ---uuua    aa    -     u 

Annotation confidence Not enough data

Genome context

CM000344.2: 11792555-11792649 [+]

Mature ptc-miR478s

• Accession: MIMAT0002093
• Description: Populus trichocarpa ptc-miR478s mature miRNA
• Sequence: 70 - UAACGUGUCUCCUAUUUUUAGGGA - 93
• Evidence: not_experimental

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203