Stem-loop ptc-MIR478o

Accession

MI0002383

Description

Populus trichocarpa ptc-MIR478o precursor miRNA

Gene family

MIPF0000052; MIR478

Literature search

1 open access papers mention ptc-MIR478o
(2 sentences)

Sequence

ucuccuuuuuaggaauaaacguuaauauucuagacgagucuccuaaauuuuagggacugaugucauuuuUAACGUGUCUCCUAUUUUUAGGGAcc
..(((((..(((((....(((((((.......((((((((.(((((...)))))))))..))))....)))))))...))))).....)))))..

Structure

uc     ---uu     auaa       uauucua    --    u     a 
  uccuu     uagga    acguuaa       gacg  aguc ccuaa  
  |||||     |||||    |||||||       ||||  |||| ||||| u
  AGGGA     AUCCU    UGCAAUu       cugu  ucag ggauu  
cc     UUUUU     -CUG       ---uuua    ag    -     u 

Annotation confidence Not enough data

Genome context

CM000337.2: 48043128-48043222 [+]

Mature ptc-miR478o

• Accession: MIMAT0002089
• Description: Populus trichocarpa ptc-miR478o mature miRNA
• Sequence: 70 - UAACGUGUCUCCUAUUUUUAGGGA - 93
• Evidence: not_experimental

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203