Stem-loop ptc-MIR478j

Accession

MI0002378

Description

Populus trichocarpa ptc-MIR478j precursor miRNA

Gene family

MIPF0000052; MIR478

Literature search

1 open access papers mention ptc-MIR478j
(2 sentences)

Sequence

agucuccuaauuuuuagggacugauguuauuuuUAACGUGUCUCCUAUUUUUAGGGAcc
.(((.(((((....(((((((..((((((....))))))))).))))...)))))))).

Structure

a   u     uuuu    -   ug      u 
 guc ccuaa    uagg gac  auguua u
 ||| |||||    |||| |||  ||||||  
 cAG GGAUU    AUCC CUG  UGCAAU u
c   -     -UUU    U   --      u 

Annotation confidence Not enough data

Genome context

CM000344.2: 16456537-16456595 [+]

Mature ptc-miR478j

• Accession: MIMAT0002084
• Description: Populus trichocarpa ptc-miR478j mature miRNA
• Sequence: 34 - UAACGUGUCUCCUAUUUUUAGGGA - 57
• Evidence: not_experimental

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203