Stem-loop ptc-MIR478f

Accession

MI0002375

Description

Populus trichocarpa ptc-MIR478f precursor miRNA

Gene family

MIPF0000052; MIR478

Literature search

1 open access papers mention ptc-MIR478f
(2 sentences)

Sequence

aaguaucuuauuuuuaggagccgaugucauuuuuuUGACAUGUCUUCUAUUUUUAGGGAccga
..((.(((((....((((((.(.((((((......))))))).))))))....)))))))...

Structure

-aa  a     uuuu      c g      uu 
   gu ucuua    uaggag c auguca  u
   || |||||    |||||| | ||||||   
   cA GGGAU    AUCUUC G UACAGU  u
agc  -     UUUU      U -      uu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR478f

• Accession: MIMAT0002081
• Description: Populus trichocarpa ptc-miR478f mature miRNA
• Sequence: 36 - UGACAUGUCUUCUAUUUUUAGGGA - 59
• Evidence: not_experimental

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203