Stem-loop ptc-MIR478b

Accession

MI0002371

Description

Populus trichocarpa ptc-MIR478b precursor miRNA

Gene family

MIPF0000052; MIR478

Literature search

1 open access papers mention ptc-MIR478b
(2 sentences)

Sequence

ucucccuuuuaggguuaaaacgucaacauuuuagacgagucuccuauuuuuagggacugguguuauuuuuUGACGUGUCUUCUAUUUUUAGGGAcc
..(((((..(((((.....(((((((......(.((.((((.((((....)))))))).)).)......)))))))...))))).....)))))..

Structure

uc     ---uu     uuaaa       cauuuu g  g    u    u 
  ucccu     uaggg     acgucaa      a ac aguc ccua u
  |||||     |||||     |||||||      | || |||| ||||  
  AGGGA     AUCUU     UGCAGUu      u ug ucag ggau u
cc     UUUUU     --CUG       uuuuau g  g    -    u 

Annotation confidence Not enough data

Genome context

CM000348.2: 7130082-7130177 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR478b

Mature ptc-miR478b

• Accession: MIMAT0002077
• Description: Populus trichocarpa ptc-miR478b mature miRNA
• Sequence: 71 - UGACGUGUCUUCUAUUUUUAGGGA - 94
• Evidence: experimental ; cloned [1], PCR [1]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203