Stem-loop ptc-MIR475b

Accession

MI0002362

Description

Populus trichocarpa ptc-MIR475b precursor miRNA

Gene family

MIPF0000145; MIR475

Literature search

2 open access papers mention ptc-MIR475b
(10 sentences)

Sequence

gucauaacaucuugaucAAUGGCCAUUGUAAGAGUAGAaggauccaugaagcaauaacucucuuugcugaaaugugcgaccaaauagacucuugauauuucauucUUACAGUGCCCAUUGAUUAAGauguuauaac
...(((((((((((((((((((.((((((((((((.((((.((((((..(((((.........)))))...)))...................))).)))))))))))))))).)))))))))))))))))))...

Structure

guc                   C            A    g   -------------------   -ga     uaa 
   auaacaucuugaucAAUGG CAUUGUAAGAGU GAag auc                   cau   agcaa   c
   ||||||||||||||||||| |||||||||||| |||| |||                   |||   |||||   u
   uauuguaGAAUUAGUUACC GUGACAUUcuua cuuu uag                   gua   ucguu   c
caa                   C            -    a   uucucagauaaaccagcgu   aag     ucu 

Annotation confidence Not enough data

Genome context

CM000344.2: 14223469-14223604 [-]

Mature ptc-miR475b-3p

• Accession: MIMAT0002068
• Description: Populus trichocarpa ptc-miR475b-3p mature miRNA
• Sequence: 106 - UUACAGUGCCCAUUGAUUAAG - 126
• Evidence: experimental ; cloned [1], Northern [1], miRNAseq [2]

Mature ptc-miR475b-5p

• Accession: MIMAT0022916
• Description: Populus trichocarpa ptc-miR475b-5p mature miRNA
• Sequence: 18 - AAUGGCCAUUGUAAGAGUAGA - 38
• Evidence: experimental ; miRNAseq [2]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203


2. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034