miRBase entry: ptc-MIR474b

Stem-loop ptc-MIR474b


Accession
MI0002359
Description
Populus trichocarpa ptc-MIR474b precursor miRNA
Gene family
MIPF0000215; MIR474

Literature search
1 open access papers mention ptc-MIR474b
(1 sentences)

Sequence

uuCAAAAGUUGUUGGGUUUGGCUGGGcagccagauccagugcuauuggguccuguuagacaacgcuauuuggucuugucaagcuagauccaacauuacuuuuugacu
.((((((((((((((((((((((.(((((...((((((((...))))))))))))).(((((.(((....))).))))).))))))))))))))..)).))))))..

Structure
-u      -  --              -----------------------G     cca        g 
  uCAAAA GU  UGUUGGGUUUGGCU                        GGcag   gauccagu  
  |||||| ||  ||||||||||||||                        |||||   |||||||| c
  aguuuu ca  acaaccuagaucga                        uuguc   cuggguua  
uc      u  uu              acuguucugguuuaucgcaacaga     ---        u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000337.2: 9003159-9003265 [+]

Database links

Mature ptc-miR474b

Accession MIMAT0002065
Description Populus trichocarpa ptc-miR474b mature miRNA
Sequence 3 - CAAAAGUUGUUGGGUUUGGCUGGG - 26
Evidence not_experimental

References

  1. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203