Stem-loop ptc-MIR477f

Accession

MI0002357

Description

Populus trichocarpa ptc-MIR477f precursor miRNA

Gene family

MIPF0000216; MIR477

Literature search

1 open access papers mention ptc-MIR477f
(1 sentences)

Sequence

ugcucGCUCUCCCUCAGGGCUUCCAacgcaguaagcagguacgugcaugucagcauauucucgcugcaggcucgaggucuuuggugagaguagugaucaa
.(((.((((((((..((((((((....((....(((.((...((((......))))...)).)))....))..)))))))).)).)))))))))......

Structure

-----u   c      -  UC        CAac  agua   a  uac    au 
      gcu GCUCUC CC  AGGGCUUC    gc    agc gg   gugc  g
      ||| |||||| ||  ||||||||    ||    ||| ||   ||||   
      uga ugagag gg  uucuggag    cg    ucg uc   uacg  u
aacuag   -      u  -u        --cu  gacg   c  uua    ac 

Annotation confidence Not enough data

Genome context

CM000338.2: 12824973-12825072 [+]

Mature ptc-miR477f

• Accession: MIMAT0002063
• Description: Populus trichocarpa ptc-miR477f mature miRNA
• Sequence: 6 - GCUCUCCCUCAGGGCUUCCA - 25
• Evidence: not_experimental

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203