Stem-loop ptc-MIR477e

Accession

MI0002356

Description

Populus trichocarpa ptc-MIR477e precursor miRNA

Gene family

MIPF0000216; MIR477

Literature search

1 open access papers mention ptc-MIR477e
(1 sentences)

Sequence

auuguucACUCUCCCUCAAGGCUUCCAacgcaauaaccagcuacguacauguaacuguguuacggcugcaggcuUGAGGCCUUUGGGGGAGAGUGGucaa
.(((.((((((((((((((((((((.((.((......((((..(((((((......))).))))))))...)))))))))).)))))))))))))).)))

Structure

a   u              -      C  c  aauaac    ua    -   gu 
 uug ucACUCUCCCUCAA GGCUUC Aa gc      cagc  cgua cau  a
 ||| |||||||||||||| |||||| || ||      ||||  |||| |||   
 aac GGUGAGAGGGGGUU CCGGAG Uu cg      gucg  gcau gug  a
-   u              U      -  -  ---gac    --    u   uc 

Annotation confidence Not enough data

Genome context

CM000350.2: 6873183-6873282 [+]

Mature ptc-miR477e-5p

• Accession: MIMAT0002062
• Description: Populus trichocarpa ptc-miR477e-5p mature miRNA
• Sequence: 8 - ACUCUCCCUCAAGGCUUCCA - 27
• Evidence: experimental ; cloned [1], Northern [1], miRNAseq [2]

Mature ptc-miR477e-3p

• Accession: MIMAT0022914
• Description: Populus trichocarpa ptc-miR477e-3p mature miRNA
• Sequence: 75 - UGAGGCCUUUGGGGGAGAGUGG - 96
• Evidence: experimental ; miRNAseq [2]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203


2. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034