miRBase entry: ptc-MIR398a

Stem-loop ptc-MIR398a


Accession
MI0002335
Description
Populus trichocarpa ptc-MIR398a precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
5 open access papers mention ptc-MIR398a
(14 sentences)

Sequence

guacaccccagaggaguggcuccagagaacacaggggguugguuuucuagcuguaagcuacaagauggacaaagcacucUGUGUUCUCAGGUCACCCCUUuggggcacc
.....(((((((((.((((((...((((((((((((((((.(((((.(((((...))))).))))).)))....).)))))))))))).)))))).)))))))))....

Structure
guaca         a      cca            - ----   g     c     g 
     ccccagagg guggcu   gagaacacaggg g    guu guuuu uagcu  
     ||||||||| ||||||   |||||||||||| |    ||| ||||| ||||| u
     gggguUUCC CACUGG   CUCUUGUGUcuc c    cag uagaa aucga  
-ccac         C      --A            a gaaa   g     c     a 


Annotation confidence Not enough data
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Genome context
CM000346.2: 15683184-15683292 [+]

Database links

Mature ptc-miR398a

Accession MIMAT0002041
Description Populus trichocarpa ptc-miR398a mature miRNA
Sequence 80 - UGUGUUCUCAGGUCACCCCUU - 100
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604