miRBase entry: ptc-MIR396f

Stem-loop ptc-MIR396f


Accession
MI0002330
Description
Populus trichocarpa ptc-MIR396f precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
6 open access papers mention ptc-MIR396f
(13 sentences)

Sequence

cuuggugauuUUCCACGGCUUUCUUGAACUGuauauauuaucaauggcuuuuuacaagacuggaagaugguuuccauggagaagaauugucacaaaaacaguucaagaaagcccugaaaaauuauuu
...(((((((((.((.((((((((((((((((.........((((..((((((.((....((((((....)))))))))))))).))))........)))))))))))))))).)).))))))))).

Structure
cuu         C  C                auauauuau    gg      a  agac      a 
   ggugauuUU CA GGCUUUCUUGAACUGu         caau  cuuuuu ca    uggaag u
   ||||||||| || ||||||||||||||||         ||||  |||||| ||    ||||||  
   uuauuaaaa gu ccgaaagaacuugaca         guua  gaagag gu    accuuu g
--u         a  c                -aaaacacu    -a      -  ----      g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000342.2: 25199401-25199527 [-]

Database links

Mature ptc-miR396f

Accession MIMAT0002036
Description Populus trichocarpa ptc-miR396f mature miRNA
Sequence 11 - UUCCACGGCUUUCUUGAACUG - 31
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604