Stem-loop ptc-MIR396d

Accession

MI0002328

Description

Populus trichocarpa ptc-MIR396d precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

6 open access papers mention ptc-MIR396d
(14 sentences)

Sequence

gaaaguccuggucaugcuuUUCCACAGCUUUCUUGAACUUccuugccaugcuuaacuuguguguguguauagaucacuauauaucuguauaguuauacacauuuagcuagcuagcaccauugaagcucaagaaagccgugggagaacauggcaacucaggauuuuu
((((((((((((((((.((((((((.((((((((((.((((..((...((((...((.((..(((((((((....(((((((....))))))))))))))))...)).))..)))).))..)))).)))))))))).)))))))).))))))....))))))))))

Structure

          ----      c        A          A    cu  cca    uaa  u  -gu         gauc       a 
gaaaguccug    gucaug uuUUCCAC GCUUUCUUGA CUUc  ug   ugcu   cu gu   guguguaua    acuauau u
||||||||||    |||||| |||||||| |||||||||| ||||  ||   ||||   || ||   |||||||||    |||||||  
uuuuuaggac    cgguac agagggug cgaaagaacu gaag  ac   acga   ga cg   uacacauau    ugauaug c
          ucaa      a        c          c    uu  --c    -uc  u  auu         ----       u 

Annotation confidence Not enough data

Genome context

CM000342.2: 4642885-4643050 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR396d

Mature ptc-miR396d

• Accession: MIMAT0002034
• Description: Populus trichocarpa ptc-miR396d mature miRNA
• Sequence: 20 - UUCCACAGCUUUCUUGAACUU - 40
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604