miRBase entry: ptc-MIR395f

Stem-loop ptc-MIR395f


Accession
MI0002320
Description
Populus trichocarpa ptc-MIR395f precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
5 open access papers mention ptc-MIR395f
(7 sentences)

Sequence

cugucccccggaguuucccugaccacuucacuggggcuauaauucuacucuucguguuuaaggguagaggcaacccuuccucaCUGAAGUGUUUGGGGGAACUCuggguggca
.((((.((((((((((((((((.(((((((.(((((......((((((((((.......)))))))))).........))))).))))))).)))))))))))))))).))))

Structure
c    c                c       c     ---cuauaa          cg 
 uguc cccggaguuucccuga cacuuca ugggg         uucuacucuu  u
 |||| |||||||||||||||| ||||||| |||||         ||||||||||  g
 acgg ggguCUCAAGGGGGUU GUGAAGU acucc         gagaugggaa  u
-    u                U       C     uucccaacg          uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ptc-miR395f

Accession MIMAT0002026
Description Populus trichocarpa ptc-miR395f mature miRNA
Sequence 84 - CUGAAGUGUUUGGGGGAACUC - 104
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604