miRBase entry: ptc-MIR393c

Stem-loop ptc-MIR393c


Accession
MI0002311
Description
Populus trichocarpa ptc-MIR393c precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
3 open access papers mention ptc-MIR393c
(6 sentences)

Sequence

gcuggaguguUCCAAAGGGAUCGCAUUGAUCuaaugacucucgaugucuaaaucauauuaauguuuaguuuuuucguuggaucaugcgaucccuuaggaauuuucca
..(((((.(((((.((((((((((((.((((((((((.....((...(((((.(((....))))))))...)))))))))))))))))))))))).))))).)))))

Structure
gc     u     A            U          cucuc  ugu     u   a 
  uggag guUCC AAGGGAUCGCAU GAUCuaauga     ga   cuaaa cau u
  ||||| ||||| |||||||||||| ||||||||||     ||   ||||| |||  
  accuu uaagg uucccuagcgua cuagguugcu     uu   gauuu gua u
--     u     a            -          -----  uuu     -   a 


Annotation confidence Not enough data
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Genome context
CM000351.2: 13166756-13166862 [+]

Database links

Mature ptc-miR393c

Accession MIMAT0002017
Description Populus trichocarpa ptc-miR393c mature miRNA
Sequence 11 - UCCAAAGGGAUCGCAUUGAUC - 31
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604