miRBase entry: ptc-MIR390d

Stem-loop ptc-MIR390d


Accession
MI0002308
Description
Populus trichocarpa ptc-MIR390d precursor miRNA
Gene family
MIPF0000101; MIR390

Literature search
4 open access papers mention ptc-MIR390d
(13 sentences)

Sequence

agaaucuguuAAGCUCAGGAGGGAUAGCGCCcuaaggauaaccaugggcucuuuuuauuugguuuuugacuaucaguggCGCUAUCCAUCCUGAGUUUUAcugguu
..((((.((.((((((((((.((((((((((((...((((..((.(((((..........))))).))..)))))).)))))))))).)))))))))).)).))))

Structure
ag    u  u          G          -  aag    ac  u     cuuu 
  aauc gu AAGCUCAGGA GGAUAGCGCC cu   gaua  ca gggcu    u
  |||| || |||||||||| |||||||||| ||   ||||  || |||||     
  uugg cA UUUGAGUCCU CCUAUCGCgg ga   cuau  gu uuugg    u
--    u  U          A          u  ---    ca  u     uuua 


Annotation confidence Not enough data
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Genome context
CM000352.2: 12564435-12564540 [+]

Database links

Mature ptc-miR390d-5p

Accession MIMAT0002014
Description Populus trichocarpa ptc-miR390d-5p mature miRNA
Sequence 11 - AAGCUCAGGAGGGAUAGCGCC - 31
Evidence experimental
miRNAseq [2]

Mature ptc-miR390d-3p

Accession MIMAT0022907
Description Populus trichocarpa ptc-miR390d-3p mature miRNA
Sequence 80 - CGCUAUCCAUCCUGAGUUUUA - 100
Evidence experimental
miRNAseq [2]

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604

  2. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034