miRBase entry: ptc-MIR390a

Stem-loop ptc-MIR390a


Accession
MI0002305
Description
Populus trichocarpa ptc-MIR390a precursor miRNA
Gene family
MIPF0000101; MIR390

Literature search
4 open access papers mention ptc-MIR390a
(16 sentences)

Sequence

agaaucuguuAAGCUCAGGAGGGAUAGCGCCaugagcaugacaaagucuauguuugaguuaaucucaacaaaaucaauccagucaucaguggcgcuaucuauccugaguucuauggguu
..(((((((..(((((((((.((((((((((((..(.(((((........((((.(((.....)))))))...........)))))).)))))))))))).)))))))))..)))))))

Structure
ag       uA         G            ga c     ---aaagucua    u   u 
  aaucugu  AGCUCAGGA GGAUAGCGCCau  g augac           uguu gag u
  |||||||  ||||||||| ||||||||||||  | |||||           |||| ||| a
  uugggua  uugaguccu ucuaucgcggug  c uacug           acaa cuc a
--       uc         a            -a -     accuaacuaaa    -   u 


Annotation confidence Not enough data
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Genome context
CM000337.2: 27693951-27694069 [+]

Database links

Mature ptc-miR390a

Accession MIMAT0002011
Description Populus trichocarpa ptc-miR390a mature miRNA
Sequence 11 - AAGCUCAGGAGGGAUAGCGCC - 31
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604