miRBase entry: ptc-MIR319d

Stem-loop ptc-MIR319d


Accession
MI0002299
Description
Populus trichocarpa ptc-MIR319d precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
8 open access papers mention ptc-MIR319d
(30 sentences)

Sequence

aaugguuuaacagagcuuccuucaguccacucauggacgggcgaaggguuuggauuagcugccgacucauucauucaaacacaguagacaaggaguggcagcggcugcuauugugaaugugugaaugacgcgggagauuaauuucauccuuuucuucucugugcUUGGACUGAAGGGAGCUCCCuuuaauugu
.((((((.((..(((((((((((((((((..((((((.(((.(((((((..(((((((((.(((..((((((((.((..((((((((.((.(..((....))..)))))))))))..)).))))))))..))).)).))))))).))))))).))).))))))..)))))))))))))))))..)).))))))

Structure
a      u  ca                 cu      c   c       uu       -  g   ac        u  aa        a  a ga  g 
 augguu aa  gagcuuccuucagucca  caugga ggg gaagggu  ggauuag cu ccg  ucauucau ca  cacaguag ca g  gu g
 |||||| ||  |||||||||||||||||  |||||| ||| |||||||  ||||||| || |||  |||||||| ||  |||||||| || |  ||  
 uguuaa uu  CUCGAGGGAAGUCAGGU  gugucu uuc uuuccua  uuuaauu ga ggc  aguaagug gu  guguuauc gu c  cg c
-      u  CC                 Uc      c   u       -c       a  g   gc        u  aa        -  - gg  a 


Annotation confidence Not enough data
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Genome context
CM000355.2: 15846565-15846757 [+]

Database links

Mature ptc-miR319d

Accession MIMAT0002005
Description Populus trichocarpa ptc-miR319d mature miRNA
Sequence 165 - UUGGACUGAAGGGAGCUCCC - 184
Evidence experimental
cloned [1]

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604

  3. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203