miRBase entry: ptc-MIR319b

Stem-loop ptc-MIR319b


Accession
MI0002297
Description
Populus trichocarpa ptc-MIR319b precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
8 open access papers mention ptc-MIR319b
(49 sentences)

Sequence

uaauagauaagagagcuuuuuucgguccacuuauagauaguaauaugauuuaauuaguuaccgacucauucauccaaauacugaguuaugagcuaagauuacccaguaaaugaaugagugaugcgggagacaaauuaaaucuuaaacuuccuaucaUUGGACUGAAGGGAGCUCCCuuuacuguu
.(((((..(((.(((((((((((((((((...((((..(((.....(((((((((.(((.(((..((((((((.((..(((((.((.((........)).)).)))))..)).))))))))..)))..))).)))))))))....)))..))))...))))))))))))))))).)))..)))))

Structure
u     au   a                 cuu    au   aauau         a   -a   ac        c  aa     a  u  gag 
 aauag  aag gagcuuuuuucggucca   auag  agu     gauuuaauu guu  ccg  ucauucau ca  uacug gu au   c
 |||||  ||| |||||||||||||||||   ||||  |||     ||||||||| |||  |||  |||||||| ||  ||||| || ||    
 uuguc  uuC CUCGAGGGAAGUCAGGU   uauc  uca     cuaaauuaa cag  ggc  agugagua gu  augac ca ua   u
-     au   C                 Uac    cu   -aauu         a   ag   gu        a  aa     c  u  gaa 


Annotation confidence Not enough data
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Genome context
CM000339.2: 13875330-13875514 [+]

Database links

Mature ptc-miR319b

Accession MIMAT0002003
Description Populus trichocarpa ptc-miR319b mature miRNA
Sequence 157 - UUGGACUGAAGGGAGCUCCC - 176
Evidence experimental
cloned [1]

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604

  3. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203