miRBase entry: ptc-MIR172a

Stem-loop ptc-MIR172a


Accession
MI0002287
Description
Populus trichocarpa ptc-MIR172a precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
8 open access papers mention ptc-MIR172a
(34 sentences)

Sequence

uuguuugcaggugcagcaucaucaagauucacauucaaauagauguaccgaagcuauacagcuauguagcuagcuagcaauguauaaucauuguaggugAGAAUCUUGAUGAUGCUGCAUcagccauaa
......((.((((((((((((((((((((((((((......))))).....(((((((......))))))).(((.((((((......)))))).)))..))))))))))))))))))))).)).....

Structure
uuguuu  a                     acauucaaauagauguaccgaagcuauacagcuauguagcua   a      ua 
      gc ggugcagcaucaucaagauuc                                          gcu gcaaug  u
      || |||||||||||||||||||||                                          ||| ||||||   
      cg cUACGUCGUAGUAGUUCUAAG                                          ugg uguuac  a
-aauac  a                     ----------------------------------------Ag   a      ua 


Annotation confidence Not enough data
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Genome context
CM000344.2: 1941920-1942048 [+]

Database links

Mature ptc-miR172a

Accession MIMAT0001993
Description Populus trichocarpa ptc-miR172a mature miRNA
Sequence 100 - AGAAUCUUGAUGAUGCUGCAU - 120
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604