Stem-loop ptc-MIR171g

Accession

MI0002283

Description

Populus trichocarpa ptc-MIR171g precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

6 open access papers mention ptc-MIR171g
(11 sentences)

Sequence

gaaagugggggaUGUUGGGAUGGCUCAAUCAUGucaaaucucccaaauuaugauguugggucuuuuaaucUGAUUGAGCCGUGCCAAUAUCacacuucuu
..(((((...((((((((.((((((((((((.((.(((...(((((.........)))))...))).)).)))))))))))).)))))))).)))))...

Structure

-ga     ggg        G            U  c   ucu     auu 
   aagug   gaUGUUGG AUGGCUCAAUCA Gu aaa   cccaa   a
   |||||   |||||||| |||||||||||| || |||   |||||   u
   uucac   CUAUAACC UGCCGAGUUAGU ua uuu   ggguu   g
uuc     --a        G            c  a   ucu     gua 

Annotation confidence Not enough data

Genome context

CM000348.2: 11044609-11044708 [+]

Mature ptc-miR171g-3p

• Accession: MIMAT0001989
• Description: Populus trichocarpa ptc-miR171g-3p mature miRNA
• Sequence: 71 - UGAUUGAGCCGUGCCAAUAUC - 91
• Evidence: experimental ; cloned [1], miRNAseq [3]

Mature ptc-miR171g-5p

• Accession: MIMAT0022902
• Description: Populus trichocarpa ptc-miR171g-5p mature miRNA
• Sequence: 13 - UGUUGGGAUGGCUCAAUCAUG - 33
• Evidence: experimental ; miRNAseq [3]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203


3. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034