miRBase entry: ptc-MIR171e

Stem-loop ptc-MIR171e


Accession
MI0002281
Description
Populus trichocarpa ptc-MIR171e precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
6 open access papers mention ptc-MIR171e
(11 sentences)

Sequence

guggaaauuugauguuggcagagcucaaucaaaucaaagcacucaaugguuggguucuuucaucUGAUUGAGCCGUGCCAAUAUCgcauuaaau
.....(((.(((((((((((..(((((((((.((.((((.((((((...)))))).)))).)).)))))))))..))))))))))).)))....

Structure
gugga   u           ga         a  c    c      u 
     aau ugauguuggca  gcucaauca au aaag acucaa  
     ||| |||||||||||  ||||||||| || |||| |||||| g
     uua gCUAUAACCGU  CGAGUUAGU ua uuuc uggguu  
-uaaa   c           GC         c  c    u      g 


Annotation confidence Not enough data
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Genome context
CM000337.2: 31797187-31797280 [-]

Database links

Mature ptc-miR171e

Accession MIMAT0001987
Description Populus trichocarpa ptc-miR171e mature miRNA
Sequence 65 - UGAUUGAGCCGUGCCAAUAUC - 85
Evidence experimental
cloned [1]

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604

  2. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203