miRBase entry: ptc-MIR169y

Stem-loop ptc-MIR169y


Accession
MI0002275
Description
Populus trichocarpa ptc-MIR169y precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
9 open access papers mention ptc-MIR169y
(12 sentences)

Sequence

ucuuguuuagUAGCCAUGGAUGAAUUGCCUGcuuccaaaaugaggugucaagccgagauaaacauacaaguuugaucccucauugggguucccaggcagucaucagcuuggcuaacuugacag
...((((.((((((((..(((((.(((((((...((..(((((((.(((((((................))))))).)))))))..))....))))))))))))....))))).))).)))).

Structure
ucu    u   -     --UG     A       -cuu  aa       u       cgagaua 
   uguu agU AGCCA    GAUGA UUGCCUG    cc  aaugagg gucaagc       a
   |||| ||| |||||    ||||| |||||||    ||  ||||||| |||||||        
   acag uca ucggu    cuacu gacggac    gg  uuacucc uaguuug       a
--g    u   a     ucga     -       ccuu  gg       c       aacauac 


Annotation confidence Not enough data
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Genome context
CM000341.2: 6551729-6551851 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptc-MIR169y
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR169y

Accession MIMAT0001981
Description Populus trichocarpa ptc-miR169y mature miRNA
Sequence 11 - UAGCCAUGGAUGAAUUGCCUG - 31
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604