miRBase entry: ptc-MIR169x

Stem-loop ptc-MIR169x


Accession
MI0002274
Description
Populus trichocarpa ptc-MIR169x precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
9 open access papers mention ptc-MIR169x
(12 sentences)

Sequence

ugcuguuuucUAGCCAAGGAUGACUUGCUCGuuagcccuugaaagauguuucaaauuuaggcugcauaugcucagaaccuuuuucuggcuucaggcaaucaucuuggcuaaaugacag
..(((((...((((((((.((((.(((((...(((((.((((((....)))))).....))))).....((.(((((.....)))))))....)))))))))))))))))...)))))

Structure
ug     uuc        G    C     --------------------------CGu     ----c      g 
  cuguu   UAGCCAAG AUGA UUGCU                             uagcc     uugaaa a
  |||||   |||||||| |||| |||||                             |||||     ||||||  
  gacag   aucgguuc uacu aacgg                             gucgg     aacuuu u
--     uaa        -    -     acuucggucuuuuuccaagacucguauac     auuua      g 


Annotation confidence Not enough data
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Genome context
CM000343.2: 6023427-6023544 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptc-MIR169x
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR169x

Accession MIMAT0001980
Description Populus trichocarpa ptc-miR169x mature miRNA
Sequence 11 - UAGCCAAGGAUGACUUGCUCG - 31
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604