miRBase entry: ptc-MIR169w

Stem-loop ptc-MIR169w


Accession
MI0002273
Description
Populus trichocarpa ptc-MIR169w precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
9 open access papers mention ptc-MIR169w
(12 sentences)

Sequence

cguguuuggUAGCCAAGGAUGACUUGCCCAcucuauggaaagaguucucaagcacacggcagagaggacccuuacuucggcucugggcagucaccuuggcuaugcugac
...(((..((((((((((.(((((.(((((.....(((((((.((((((..((.....))...)))))).)))..))))....))))))))))))))))))))...)))

Structure
cgu   -ug          A     U     cucua    --   a      -aa  a 
   guu   gUAGCCAAGG UGACU GCCCA     ugga  aag guucuc   gc c
   |||   |||||||||| ||||| |||||     ||||  ||| ||||||   || a
   cag   uaucgguucc acuga cgggu     gcuu  uuc caggag   cg c
---   ucg          -     -     -cucg    ca   c      aga  g 


Annotation confidence Not enough data
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Genome context
CM000337.2: 27741955-27742063 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptc-MIR169w
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR169w

Accession MIMAT0001979
Description Populus trichocarpa ptc-miR169w mature miRNA
Sequence 10 - UAGCCAAGGAUGACUUGCCCA - 30
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604