miRBase entry: ptc-MIR169v

Stem-loop ptc-MIR169v


Accession
MI0002272
Description
Populus trichocarpa ptc-MIR169v precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
9 open access papers mention ptc-MIR169v
(12 sentences)

Sequence

cguguuuggUAGCCAAGGAUGACUUGCCCAcuccauugaaagaguuuuucaagcauaugguaguguagaacuuuucuuugguucugggcagucaucuuggcuaugcugac
...(((..(((((((((.((((((.(((((..(((..(((.(((((((....((((......))))))))))))))..)))...))))))))))))))))))))...)))

Structure
cgu   -ug         G      U     -cu   uu   a       ucaa    au 
   guu   gUAGCCAAG AUGACU GCCCA   cca  gaa gaguuuu    gcau  g
   |||   ||||||||| |||||| |||||   |||  ||| |||||||    ||||   
   cag   uaucgguuc uacuga cgggu   ggu  cuu uucaaga    ugug  g
---   ucg         -      -     cuu   uu   -       ----    au 


Annotation confidence Not enough data
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Genome context
CM000345.2: 7559813-7559922 [+]

Database links

Mature ptc-miR169v

Accession MIMAT0001978
Description Populus trichocarpa ptc-miR169v mature miRNA
Sequence 10 - UAGCCAAGGAUGACUUGCCCA - 30
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604