miRBase entry: ptc-MIR169j

Stem-loop ptc-MIR169j


Accession
MI0002260
Description
Populus trichocarpa ptc-MIR169j precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
9 open access papers mention ptc-MIR169j
(19 sentences)

Sequence

ucuuguuugaUAGCCAAGGAUGACUUGCCUGcuacuugcaagaguuucugcaaagagaucagaaccaaauaugcauggaauuauauguaaugaaacucuuguuugauugccaggcagucuccuuggcuagccugaca
...((((...((((((((((.((((.((((((.....(((((((((((.......................((((((......))))))..)))))))))))......).)))))))))))))))))))....))))

Structure
ucu    -uga          U    U     - -uacuu           ugcaaagagaucagaaccaaaua      ga 
   uguu    UAGCCAAGGA GACU GCCUG c      gcaagaguuuc                       ugcaug  a
   ||||    |||||||||| |||| ||||| |      |||||||||||                       ||||||   
   acag    aucgguuccu cuga cggac g      uguucucaaag                       auguau  u
---    uccg          -    -     c uuaguu           ---------------------ua      au 


Annotation confidence Not enough data
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Genome context
CM000337.2: 31302159-31302295 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptc-MIR169j
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR169j

Accession MIMAT0001966
Description Populus trichocarpa ptc-miR169j mature miRNA
Sequence 11 - UAGCCAAGGAUGACUUGCCUG - 31
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604