miRBase entry: ptc-MIR169e

Stem-loop ptc-MIR169e


Accession
MI0002255
Description
Populus trichocarpa ptc-MIR169e precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
9 open access papers mention ptc-MIR169e
(12 sentences)

Sequence

uaucguggcgCAGCCAAGGAUGACUUGCCGGcaagcuccucacacguauuuuguuucgaguuucauugauggcauugcuagauagauauauaugauuucguaauucaaacuuuugggccauugucugguugaaaugaucggcaagcuguccuuggcuaugucucua
....(.((((.(((((((((((.((((((((...................(((((((((.(.....(((((((....(((((........((((....)))).........))))))))))))...).))))))))))))))))).))))))))))).)))).)..

Structure
uauc u    C           A        caagcuccucacacguauu         g uucau       auug     -uagauaua    a 
    g ggcg AGCCAAGGAUG CUUGCCGG                   uuguuucga u     ugauggc    cuaga         uaug u
    | |||| ||||||||||| ||||||||                   ||||||||| |     |||||||    |||||         ||||  
    c cugu ucgguuccugu gaacggcu                   aguaaaguu g     guuaccg    gguuu         augc u
--au u    a           c        -------------------         g --ucu       ----     ucaaacuua    u 


Annotation confidence Not enough data
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Genome context
CM000344.2: 5476416-5476581 [+]

Database links

Mature ptc-miR169e

Accession MIMAT0001961
Description Populus trichocarpa ptc-miR169e mature miRNA
Sequence 11 - CAGCCAAGGAUGACUUGCCGG - 31
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604