Stem-loop ptc-MIR169c

Accession

MI0002253

Description

Populus trichocarpa ptc-MIR169c precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

9 open access papers mention ptc-MIR169c
(12 sentences)

Sequence

aaguuugaugCAGCCAAGGAUGACUUGCCGAcgacucaauuuuugcuuccauaugguagaagagaugaauagguuggcagguuuuccuuggcuacauuuucc
......((((.(((((((((.(((((((((((......((((((.((.((....)).)).))))))......))))))))))).))))))))).))))....

Structure

aaguuu    C         U           gacuca      g  u  a 
      gaug AGCCAAGGA GACUUGCCGAc      auuuuu cu cc u
      |||| ||||||||| |||||||||||      |||||| || ||  
      uuac ucgguuccu uuggacgguug      uagaga ga gg a
--ccuu    a         u           gauaag      a  u  u 

Annotation confidence Not enough data

Genome context

CM000355.2: 4971659-4971760 [-]

Mature ptc-miR169c

• Accession: MIMAT0001959
• Description: Populus trichocarpa ptc-miR169c mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGA - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604