miRBase entry: ptc-MIR169ad

Stem-loop ptc-MIR169ad


Accession
MI0002249
Description
Populus trichocarpa ptc-MIR169ad precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
9 open access papers mention ptc-MIR169ad
(12 sentences)

Sequence

guuguucggUAGCCAAGGACGACUUGCCCAcacuaugagacaagugguuagaauuagcaacuucuuaauugguuaugggaagucuccuuggcuaugcugac
.....((((((((((((((.(((((.((((.(((((((((..(((.((((....)))).))))))))..))))..))))))))))))))))))..))))).

Structure
guugu     --         C     G    -c    --     ca   g    g 
     ucggU  AGCCAAGGA GACUU CCCA  acua  ugaga  agu guua a
     |||||  ||||||||| ||||| ||||  ||||  |||||  ||| ||||  
     agucg  ucgguuccu cugaa gggu  uggu  auucu  uca cgau a
----c     ua         -     -    au    ua     --   a    u 


Annotation confidence Not enough data
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Genome context
CM000343.2: 6019640-6019740 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptc-MIR169ad
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR169ad

Accession MIMAT0001955
Description Populus trichocarpa ptc-miR169ad mature miRNA
Sequence 10 - UAGCCAAGGACGACUUGCCCA - 30
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604