miRBase entry: ptc-MIR167f

Stem-loop ptc-MIR167f


Accession
MI0002240
Description
Populus trichocarpa ptc-MIR167f precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
6 open access papers mention ptc-MIR167f
(47 sentences)

Sequence

cucuaucaguUGAAGCUGCCAGCAUGAUCUUagccuuccuccuuuguugaggaaagaaacAGAUCAUGUGGCAGUUUCACCuguugu
......(((.(((((((((((.((((((((...(.((((((.......)))))).)....))))))))))))))))))).)))....

Structure
cucuau   u           G        -Uag c      cu 
      cag UGAAGCUGCCA CAUGAUCU    c uuccuc  u
      ||| ||||||||||| ||||||||    | ||||||  u
      guC ACUUUGACGGU GUACUAGA    g aaggag  g
--uguu   C           -        caaa a      uu 


Annotation confidence Not enough data
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Genome context
CM000346.2: 10015916-10016002 [-]

Database links

Mature ptc-miR167f-5p

Accession MIMAT0001946
Description Populus trichocarpa ptc-miR167f-5p mature miRNA
Sequence 11 - UGAAGCUGCCAGCAUGAUCUU - 31
Evidence experimental
miRNAseq [2]

Mature ptc-miR167f-3p

Accession MIMAT0022893
Description Populus trichocarpa ptc-miR167f-3p mature miRNA
Sequence 61 - AGAUCAUGUGGCAGUUUCACC - 81
Evidence experimental
miRNAseq [2]

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604

  2. PubMed ID: 22442676
    Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
    Puzey JR, Karger A, Axtell M, Kramer EM
    PLoS One (2012) 7:e33034