miRBase entry: ptc-MIR167e

Stem-loop ptc-MIR167e


Accession
MI0002239
Description
Populus trichocarpa ptc-MIR167e precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
6 open access papers mention ptc-MIR167e
(55 sentences)

Sequence

cacuaguaguUGAAGCUGCCAGCAUGAUCUGaacuuuccuuaauuuuccuauacgggaaagacuagaucaugugguaguuucaucuauuga
...((((((.(((((((((((.(((((((((..(((((((..((......))..)))))))..)))))))))))))))))))).)))))).

Structure
cac      u           G         aa       ua  uu 
   uaguag UGAAGCUGCCA CAUGAUCUG  cuuuccu  au  u
   |||||| ||||||||||| |||||||||  |||||||  ||   
   guuauc acuuugauggu guacuagau  gaaaggg  ua  c
--a      u           -         ca       ca  uc 


Annotation confidence Not enough data
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Genome context
CM000341.2: 3575879-3575969 [+]

Database links

Mature ptc-miR167e

Accession MIMAT0001945
Description Populus trichocarpa ptc-miR167e mature miRNA
Sequence 11 - UGAAGCUGCCAGCAUGAUCUG - 31
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604