miRBase entry: ptc-MIR167c

Stem-loop ptc-MIR167c


Accession
MI0002237
Description
Populus trichocarpa ptc-MIR167c precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
6 open access papers mention ptc-MIR167c
(53 sentences)

Sequence

cacuagcaguUGAAGCUGCCAGCAUGAUCUAaauuaaccuccuucuuuaucaaggauggauuagaucaugugguaguuucaccugcuga
...((((((.(((((((((((.((((((((((.......(((.(((((...))))).)))))))))))))))))))))))).)))))).

Structure
cac      u           G          auuaacc   u     a 
   uagcag UGAAGCUGCCA CAUGAUCUAa       ucc ucuuu  
   |||||| ||||||||||| ||||||||||       ||| ||||| u
   gucguc acuuugauggu guacuagauu       agg aggaa  
--a      c           -          -------   u     c 


Annotation confidence Not enough data
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Genome context
CM000341.2: 22458162-22458250 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptc-MIR167c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR167c

Accession MIMAT0001943
Description Populus trichocarpa ptc-miR167c mature miRNA
Sequence 11 - UGAAGCUGCCAGCAUGAUCUA - 31
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604