miRBase entry: ptc-MIR164e

Stem-loop ptc-MIR164e


Accession
MI0002216
Description
Populus trichocarpa ptc-MIR164e precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
8 open access papers mention ptc-MIR164e
(40 sentences)

Sequence

gugagcaagaUGGAGAAGCAGGGCACGUGCAuuacuaacucaugcacacagagugagagagacauuucuugcuggaguuaugacucuuaccuacuauagauuguguuggcuucagcgaguuaguucuucaugugccugucuuccccaucaugauc
.....((.(((((.((((..(((((((((....((((((((...(((.....)))(((((....))))).((((((((((..(((((..........)))..))..))))))))))))))))))....)))))))))..)))).))))).))...

Structure
gugag  a     A    CA         CAuu        augcacacagagugagagagacauuucuu          ug  --   uacc 
     ca gaUGG GAAG  GGGCACGUG    acuaacuc                             gcuggaguua  ac  ucu    u
     || ||||| ||||  |||||||||    ||||||||                             ||||||||||  ||  |||     
     gu cuacc cuuc  uccguguac    ugauugag                             cgacuucggu  ug  aga    a
--cua  a     c    ug         uucu        -----------------------------          ug  uu   uauc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000352.2: 12933923-12934077 [+]

Database links

Mature ptc-miR164e

Accession MIMAT0001922
Description Populus trichocarpa ptc-miR164e mature miRNA
Sequence 11 - UGGAGAAGCAGGGCACGUGCA - 31
Evidence experimental
cloned [1]

References

  1. PubMed ID: 15916721
    Identification and characterization of new plant microRNAs using EST analysis
    "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
    "Cell Res (2005) 15:336-360

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  3. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604

  4. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203