Stem-loop ptc-MIR160e

Accession

MI0002205

Description

Populus trichocarpa ptc-MIR160e precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

6 open access papers mention ptc-MIR160e
(22 sentences)

Sequence

aagaauggccUGCCUGGCUCCCUGAAUGCCAucuaggaagcuugucaaagaguguuggcaaccuuucuauuugGCAUGAGGGGAGUCGAGCAGGccaauu
.....((((((((.(((((((((..((((((..(((((((.(((((((......))))))).)))))))..))))))..))))))))).))))))))...

Structure

aagaa        C         GA      uc       c       ag 
     uggccUGC UGGCUCCCU  AUGCCA  uaggaag uugucaa  a
     |||||||| |||||||||  ||||||  ||||||| |||||||   
     accGGACG GCUGAGGGG  UACGgu  aucuuuc aacgguu  g
--uua        A         AG      uu       c       gu 

Annotation confidence Not enough data

Genome context

CM000342.2: 167623-167722 [+]

Mature ptc-miR160e-5p

• Accession: MIMAT0001911
• Description: Populus trichocarpa ptc-miR160e-5p mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGAAUGCCA - 31
• Evidence: experimental ; miRNAseq [3]

Mature ptc-miR160e-3p

• Accession: MIMAT0022892
• Description: Populus trichocarpa ptc-miR160e-3p mature miRNA
• Sequence: 74 - GCAUGAGGGGAGUCGAGCAGG - 94
• Evidence: experimental ; miRNAseq [3]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203


3. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034