miRBase entry: ptc-MIR160d

Stem-loop ptc-MIR160d


Accession
MI0002204
Description
Populus trichocarpa ptc-MIR160d precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
6 open access papers mention ptc-MIR160d
(22 sentences)

Sequence

aaauggguuaUGCCUGGCUCCCUGUAUGCCAcagcaaagaccaaucucuucugucuuagauuggcugcugccgguggcgugcgaggagccaagcauacucucu
....((((.((((.(((((((.((((((((((.(((.((.(((((((..........)))))))))..)))..)))))))))).))))))).))))))))...

Structure
aaau    u    C       C          -a   -a  a       cuuc 
    gggu aUGC UGGCUCC UGUAUGCCAc  gca  ag ccaaucu    u
    |||| |||| ||||||| ||||||||||  |||  || |||||||     
    cuca uacg accgagg gcgugcggug  cgu  uc gguuaga    g
-ucu    -    a       a          gc   cg  -       uucu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CM000347.2: 17793833-17793935 [-]

Database links

Mature ptc-miR160d

Accession MIMAT0001910
Description Populus trichocarpa ptc-miR160d mature miRNA
Sequence 11 - UGCCUGGCUCCCUGUAUGCCA - 31
Evidence experimental
cloned [1]

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604

  2. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203