miRBase entry: ptc-MIR159e

Stem-loop ptc-MIR159e


Accession
MI0002199
Description
Populus trichocarpa ptc-MIR159e precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
9 open access papers mention ptc-MIR159e
(47 sentences)

Sequence

accauuaaauaggagcuugcucacuccagaucugaaaggaggugauaggaaaccacuucugcuacuucaugaauacccgugggugugcgcguagccauggugagcugcgcaggcuaagggucugcaugugcuaggagaugugguugccuugaucuuuuugguCUUGGGGUGAAGGGAGCUCCUauaguccca
........((((((((((.(((((((((((((...((((((((.(.(((.((((((.(((.(((...((((...((((...(((.(((((..(((((...)).)))))))).)))..))))...))))...))).))).)))))).)))).)))))))))))).))))))).)).)))))))))).......

Structure
accauuaa          g  -       -    uga        g u   a      u   g   cuu    aau    gug   g     gu   -  u 
        auaggagcuu cu cacucca gauc   aaggaggu a agg aaccac ucu cua   caug   accc   ggu ugcgc  agc ca  
        |||||||||| || ||||||| ||||   |||||||| | ||| |||||| ||| |||   ||||   ||||   ||| |||||  ||| || g
        uaUCCUCGAG GA GUGGGGU Cugg   uuuuucua u ucc uuggug aga gau   guac   uggg   ucg acgcg  ucg gu  
-acccuga          G  A       U    ---        g -   g      u   g   cgu    guc    -aa   g     --   a  g 


Annotation confidence Not enough data
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Genome context
CM000350.2: 6601853-6602044 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptc-MIR159e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptc-miR159e

Accession MIMAT0001905
Description Populus trichocarpa ptc-miR159e mature miRNA
Sequence 163 - CUUGGGGUGAAGGGAGCUCCU - 183
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604