miRBase entry: ptc-MIR156d

Stem-loop ptc-MIR156d


Accession
MI0002187
Description
Populus trichocarpa ptc-MIR156d precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
8 open access papers mention ptc-MIR156d
(77 sentences)

Sequence

guaagugaguUGACAGAAGAGAGUGAGCACacaggguacuuucuugcaugacguucaugcuugaagcuuugcgugcccacccucuaucugucaccccauca
....(((.(.(((((((((((.(((.((((.((((((...(((..((((((...))))))..))))))))).)))).))).)))).))))))).).)))..

Structure
guaa   a u       -    A   A    a      acu   uu      c 
    gug g UGACAGA AGAG GUG GCAC cagggu   uuc  gcauga  
    ||| | ||||||| |||| ||| |||| ||||||   |||  |||||| g
    uac c acugucu ucuc cac cgug guuucg   aag  cguacu  
--ac   c c       a    c   c    c      ---   uu      u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ptc-miR156d

Accession MIMAT0001893
Description Populus trichocarpa ptc-miR156d mature miRNA
Sequence 11 - UGACAGAAGAGAGUGAGCAC - 30
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604

  3. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203