Stem-loop sequence dre-mir-430b-16

Accession

MI0002156 (change log)

Description

Danio rerio miR-430b-16 stem-loop

Gene family

MIPF0000003; mir-430

Literature search

40 open access papers mention dre-mir-430b-16
(211 sentences)

Stem-loop

       u      a          --     u      uuuaa 
5' cagu gacauc acucuaacuu  uagca cuuucu     g
   |||| |||||| ||||||||||  ||||| ||||||      
3' gucg uuguag ugggguugaa  aucgu gaaaga     c
       u      a          cu     -      ugaaa 

Deep sequencing

13249982 reads, 2.68e+05 reads per million, 9 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr4: 28707110-28707190 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-430b-16

• dre-mir-430b-6: chr4: 28697111-28697191 [+]
• dre-mir-430a-13: chr4: 28697317-28697398 [+]
• dre-mir-430c-6: chr4: 28697458-28697530 [+]
• dre-mir-430b-11: chr4: 28697715-28697795 [+]
• dre-mir-430a-16: chr4: 28697921-28698002 [+]
• dre-mir-430b-9: chr4: 28698305-28698385 [+]
• dre-mir-430a-5: chr4: 28699035-28699116 [+]
• dre-mir-430c-7: chr4: 28699198-28699270 [+]
• dre-mir-430b-12: chr4: 28699455-28699535 [+]
• dre-mir-430i-1: chr4: 28699661-28699742 [+]
• dre-mir-430c-8: chr4: 28699824-28699896 [+]
• dre-mir-430b-2: chr4: 28700067-28700147 [+]
• dre-mir-430a-6: chr4: 28700798-28700879 [+]
• dre-mir-430c-9: chr4: 28700961-28701033 [+]
• dre-mir-430b-7: chr4: 28701218-28701298 [+]
• dre-mir-430a-11: chr4: 28701424-28701505 [+]
• dre-mir-430c-10: chr4: 28701587-28701659 [+]
• dre-mir-430b-13: chr4: 28701844-28701924 [+]
• dre-mir-430i-2: chr4: 28702050-28702131 [+]
• dre-mir-430c-11: chr4: 28702213-28702285 [+]
• dre-mir-430b-18: chr4: 28702456-28702536 [+]
• dre-mir-430a-7: chr4: 28703187-28703268 [+]
• dre-mir-430c-12: chr4: 28703350-28703422 [+]
• dre-mir-430b-14: chr4: 28703607-28703687 [+]
• dre-mir-430a-17: chr4: 28703813-28703894 [+]
• dre-mir-430b-20: chr4: 28704197-28704277 [+]
• dre-mir-430a-8: chr4: 28704927-28705008 [+]
• dre-mir-430c-13: chr4: 28705090-28705162 [+]
• dre-mir-430b-15: chr4: 28705347-28705427 [+]
• dre-mir-430i-3: chr4: 28705553-28705634 [+]
• dre-mir-430c-14: chr4: 28705716-28705788 [+]
• dre-mir-430b-19: chr4: 28705959-28706039 [+]
• dre-mir-430a-9: chr4: 28706690-28706771 [+]
• dre-mir-430c-15: chr4: 28706853-28706925 [+]
• dre-mir-430b-16: chr4: 28707110-28707190 [+]
• dre-mir-430a-14: chr4: 28707316-28707397 [+]
• dre-mir-430c-16: chr4: 28707457-28707529 [+]
• dre-mir-430b-3: chr4: 28707700-28707780 [+]
• dre-mir-430a-10: chr4: 28708430-28708511 [+]
• dre-mir-430c-17: chr4: 28708593-28708665 [+]
• dre-mir-430b-8: chr4: 28708850-28708930 [+]
• dre-mir-430a-15: chr4: 28709056-28709137 [+]
• dre-mir-430c-18: chr4: 28709197-28709269 [+]
• dre-mir-430b-17: chr4: 28709454-28709534 [+]

Database links

• EntrezGene:mir430b-16
• EntrezGene:mir430b-16
• RNAcentral:URS000075A3A3_7955
• miRBase Tracker:MI0002156

Mature sequence dre-miR-430b-5p

• Accession: MIMAT0031928
• Sequence: 11 - caacucuaacuuuagcaucuuuc - 33
• Deep sequencing: 316680 reads, 5 experiments
• Evidence: not experimental

Mature sequence dre-miR-430b-3p

• Accession: MIMAT0001424
• Previous IDs: dre-miR-430b
• Sequence: 49 - aaagugcuaucaaguugggguag - 71
• Deep sequencing: 264682361 reads, 9 experiments
• Evidence: experimental; cloned [1-2]
• Database links:
  • RNAcentral:URS000075EBB6_7955
• Predicted targets:
  • TargetScanFish:dre-miR-430b

References

1. PMID:15774722 "MicroRNAs regulate brain morphogenesis in zebrafish" Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM, Baskerville S, Hammond SM, Bartel DP, Schier AF Science. 308:833-838(2005).
2. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).