miRBase entry: dre-mir-455-1

Stem-loop dre-mir-455-1


Accession
MI0002077
Description
Danio rerio dre-mir-455-1 precursor miRNA
Gene family
MIPF0000129; mir-455

Literature search
1 open access papers mention dre-mir-455-1
(1 sentences)

Sequence

3897 reads, 398 reads per million, 11 experiments
ucccuggugugagggUAUGUGCCCUUGGACUACAUCGuggaagccagcaccAUGCAGUCCAUGGGCAUAUACACuugccucaaggccuagaucuuc
...(((((.(((((((((((((((.((((((.(((.(((........))).))).)))))).)))))))))).....)))))..))).))......

Structure
---ucc  -   -g     -----          U      A   C   gaa 
      cu ggu  ugagg     gUAUGUGCCC UGGACU CAU Gug   g
      || |||  |||||     |||||||||| |||||| ||| |||    
      ga ccg  acucc     CAUAUACGGG ACCUGA GUA cac   c
cuucua  u   ga     guuCA          U      C   c   gac 


Annotation confidence High
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Comments
The mir-455 precursor was predicted computationally and a mature product verified in human by Northern blot [2]. The precise sequence termini of the mature form were derived by cloning from human and rat samples (Landgraf and Tuschl, unpublished).

Genome context
chr5: 65250379-65250474 [-]

Database links

Mature dre-miR-455-5p

Accession MIMAT0001879
Description Danio rerio dre-miR-455-5p mature miRNA
Sequence 16 - UAUGUGCCCUUGGACUACAUCG - 37
Evidence not_experimental
Database links
Predicted targets

Mature dre-miR-455-3p

Accession MIMAT0031993
Description Danio rerio dre-miR-455-3p mature miRNA
Sequence 52 - AUGCAGUCCAUGGGCAUAUACAC - 74
Evidence not_experimental

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293

  2. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24