miRBase entry: dre-mir-375-1

Stem-loop dre-mir-375-1


Accession
MI0002072
Description
Danio rerio dre-mir-375-1 precursor miRNA
Gene family
MIPF0000114; mir-375

Literature search
8 open access papers mention dre-mir-375-1
(81 sentences)

Sequence

10246 reads, 660 reads per million, 11 experiments
ugcacuugcuuuacguugagccacacgcacaauacauguggauucaguUUUGUUCGUUCGGCUCGCGUUAagcaagugca
(((((((((((.((((.(((((..(((.((((.((.((......)))).)))).)))..))))))))).)))))))))))

Structure
           u    u     ac   c    u  a  ug 
ugcacuugcuu acgu gagcc  acg acaa ac ug  g
||||||||||| |||| |||||  ||| |||| || ||   
acgugaacgaA UGCG CUCGG  UGC UGUU ug ac  a
           U    -     CU   U    U  -  uu 


Annotation confidence High
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Genome context
chr6: 13800093-13800172 [-]

Database links

Mature dre-miR-375

Accession MIMAT0001876
Description Danio rerio dre-miR-375 mature miRNA
Sequence 49 - UUUGUUCGUUCGGCUCGCGUUA - 70
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293