Stem-loop sequence dre-mir-365-1

AccessionMI0002068 (change log)
DescriptionDanio rerio miR-365-1 stem-loop
Gene family MIPF0000061; mir-365
Literature search

2 open access papers mention dre-mir-365-1
(3 sentences)

Stem-loop 
   --cc      ag        gc           c     uuucag 
5'     gcaggg  aaugaggg  uuuugggggca uugug      u
       ||||||  ||||||||  ||||||||||| |||||      u
3'     cguucu  uuauuccu  aaaauccccgu aauac      u
   guca      cg        -a           -     uaccac
Get sequence
Deep sequencing
1343 reads, 33.3 reads per million, 9 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (GRCz11; GCA_000002035.4) Overlapping transcripts
chr3: 43716827-43716915 [+]
sense
OTTDART00000053888 ; si:ch73-156l6.2-001; intron 1
ENSDART00000155441 ; si:ch73-156l6.2-001; intron 1
Clustered miRNAs
< 10kb from dre-mir-365-1
dre-mir-193bchr3: 43714699-43714783 [+]
dre-mir-365-1chr3: 43716827-43716915 [+]
Database links

Mature sequence dre-miR-365

Accession MIMAT0001875
Sequence

55 -  

uaaugccccuaaaaauccuuau

 - 76

Get sequence
Deep sequencing3975 reads, 8 experiments
Evidence by similarity; MI0000768
Predicted targets

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).