miRBase entry: dre-mir-338-1

Stem-loop dre-mir-338-1


Accession
MI0002063
Description
Danio rerio dre-mir-338-1 precursor miRNA
Gene family
MIPF0000097; mir-338

Literature search
4 open access papers mention dre-mir-338-1
(14 sentences)

Sequence

6871 reads, 506 reads per million, 11 experiments
gguuucucccugcaacaaucuccugaugcugccugaguguuuuucuuccacUCCAGCAUCAGUGAUUUUGUUGccggaggucacc
(((.(((((..(((((((..(((((((((((...(((((.........)))))))))))))).))..))))))).)))))..)))

Structure
   -u     cu       uc  -         ccu     uuu 
ggu  ucucc  gcaacaa  uc cugaugcug   gagug   u
|||  |||||  |||||||  || |||||||||   |||||   u
cca  ggagg  cGUUGUU  AG GACUACGAC   CUcac   c
   cu     -c       UU  U         ---     cuu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr12: 35710521-35710605 [-]

Database links

Mature dre-miR-338

Accession MIMAT0001873
Description Danio rerio dre-miR-338 mature miRNA
Sequence 52 - UCCAGCAUCAGUGAUUUUGUUG - 73
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293