Stem-loop dre-mir-301b

Accession

MI0002061

Description

Danio rerio dre-mir-301b precursor miRNA

Gene family

MIPF0000034; mir-130

Literature search

1 open access papers mention dre-mir-301b
(5 sentences)

Sequence

248 reads, 31 reads per million, 10 experiments

aaggucuguuGCUUUGACGAUGUUGCACUACugaaccaucuaaucaagCAGUGCAAUAGUAUUGUCAUUGcauucggcuuu
((((((...(((..(((((((((((((((.((..............)).))))))))...)))))))..)))...))))))

Structure

      ugu   UU       ---        A  gaacca 
aagguc   uGC  UGACGAU   GUUGCACU Cu      u
||||||   |||  |||||||   |||||||| ||       
uuucgg   acG  ACUGUUA   UAACGUGA ga      c
      cuu   UU       UGA        C  acuaau 

Annotation confidence High

Genome context

chr5: 13289353-13289433 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from dre-mir-301b

Mature dre-miR-301b-3p

• Accession: MIMAT0001871
• Description: Danio rerio dre-miR-301b-3p mature miRNA
• Sequence: 49 - CAGUGCAAUAGUAUUGUCAUUG - 70
• Evidence: experimental ; cloned [1]

Mature dre-miR-301b-5p

• Accession: MIMAT0031990
• Description: Danio rerio dre-miR-301b-5p mature miRNA
• Sequence: 11 - GCUUUGACGAUGUUGCACUAC - 31
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293