Stem-loop sequence dre-mir-206-2

Accession

MI0002046 (change log)

Description

Danio rerio miR-206-2 stem-loop

Gene family

MIPF0000038; mir-1

Literature search

14 open access papers mention dre-mir-206-2
(190 sentences)

Stem-loop

   -ga u   c  -uug        ga g                cc     uucag 
5'    g ugg ug    cuuauuga  c acauacuuccuuauau  ccaua     a
      | ||| ||    ||||||||  | ||||||||||||||||  |||||     a
3'    c acu ac    gagugacu  g ugugugaaggaaugua  gguau     u
   cua u   -  ucua        uc g                -a     cuaau 

Deep sequencing

521613 reads, 3.2e+04 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr17: 5967238-5967346 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-206-2

• dre-mir-206-2: chr17: 5967238-5967346 [-]
• dre-mir-133c: chr17: 5962975-5963065 [-]

Database links

• EntrezGene:mir206-2
• EntrezGene:mir206-2
• RNAcentral:URS000075F016_7955
• miRBase Tracker:MI0002046

Mature sequence dre-miR-206-3p

• Accession: MIMAT0001866
• Previous IDs: dre-miR-206
• Sequence: 64 - uggaauguaaggaagugugugg - 85
• Deep sequencing: 1041898 reads, 5 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000034B6F5_7955
• Predicted targets:
  • TargetScanFish:dre-miR-206

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).