Stem-loop sequence dre-mir-206-1

Accession

MI0002045 (change log)

Description

Danio rerio miR-206-1 stem-loop

Gene family

MIPF0000038; mir-1

Literature search

14 open access papers mention dre-mir-206-1
(190 sentences)

Stem-loop

   ---    guug       u  ag                gc     uuaau 
5'    gaau    ccucuug ga  acaugcuuccuuauau  ccaua     g
      ||||    ||||||| ||  ||||||||||||||||  |||||     c
3'    uuua    gggggac uu  ugugugaaggaaugua  gguau     u
   cug    --aa       u  gg                -a     ugaac 

Deep sequencing

520403 reads, 3.19e+04 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr20: 19544648-19544746 [-]
• Overlapping transcripts:

  sense

  OTTDART00000058152 ; si:ch211-101l18.8-001; intron 1

  ENSDART00000152763 ; si:ch211-101l18.8-001; intron 1

Clustered miRNAs

< 10kb from dre-mir-206-1

• dre-mir-206-1: chr20: 19544648-19544746 [-]
• dre-mir-133b: chr20: 19543379-19543462 [-]

Database links

• EntrezGene:mir206-1
• EntrezGene:mir206-1
• RNAcentral:URS000075991B_7955
• miRBase Tracker:MI0002045

Mature sequence dre-miR-206-5p

• Accession: MIMAT0031988
• Sequence: 21 - acaugcuuccuuauaugcccaua - 43
• Deep sequencing: 81 reads, 2 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00007820CA_7955

Mature sequence dre-miR-206-3p

• Accession: MIMAT0001866
• Previous IDs: dre-miR-206
• Sequence: 59 - uggaauguaaggaagugugugg - 80
• Deep sequencing: 1041898 reads, 5 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000034B6F5_7955
• Predicted targets:
  • TargetScanFish:dre-miR-206

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).