Stem-loop sequence dre-mir-202

Accession

MI0002040 (change log)

Description

Danio rerio miR-202 stem-loop

Gene family

MIPF0000121; mir-202

Literature search

4 open access papers mention dre-mir-202
(106 sentences)

Stem-loop

          u           -a   a         cau 
5' cuguucc uuuuccuaugc  uau ccucuuuga   g
   ||||||| |||||||||||  ||| |||||||||   c
3' ggcgggg aaaaggguacg  aua ggagaaauu   u
          u           gg   c         ucg 

Deep sequencing

63 reads, 2.86e+04 reads per million, 7 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr13: 50602639-50602714 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir202
• EntrezGene:mir202
• RNAcentral:URS000075DDEF_7955
• miRBase Tracker:MI0002040

Mature sequence dre-miR-202-5p

• Accession: MIMAT0003406
• Previous IDs: dre-miR-202*
• Sequence: 11 - uuccuaugcauauaccucuuug - 32
• Deep sequencing: 36 reads, 5 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075E17E_7955

Mature sequence dre-miR-202-3p

• Accession: MIMAT0001864
• Previous IDs: dre-miR-202
• Sequence: 47 - agaggcauagggcaugggaaaa - 68
• Deep sequencing: 26 reads, 4 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075D377_7955
• Predicted targets:
  • TargetScanFish:dre-miR-202

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).