miRBase entry: dre-mir-200b

Stem-loop dre-mir-200b


Accession
MI0002038
Description
Danio rerio dre-mir-200b precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
17 open access papers mention dre-mir-200b
(284 sentences)

Sequence

26872 reads, 2577 reads per million, 11 experiments
gguagucgucucCAUCUUACGAGGCAGCAUUGGAuuucauuacuuuuucUAAUACUGCCUGGUAAUGAUGAugauugcugcc
((((((.(((..((((((((.((((((.((((((.............)))))).)))))).)))).))))..))).))))))

Structure
      c   uc    -    G      C      uuuca 
gguagu guc  CAUC UUAC AGGCAG AUUGGA     u
|||||| |||  |||| |||| |||||| ||||||     u
ccgucg uag  GUAG AAUG UCCGUC UAAUcu     a
      u   uA    U    G      A      uuuuc 


Annotation confidence High
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Genome context
chr23: 24072029-24072110 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from dre-mir-200b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-200b-3p

Accession MIMAT0001862
Description Danio rerio dre-miR-200b-3p mature miRNA
Sequence 50 - UAAUACUGCCUGGUAAUGAUGA - 71
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-200b-5p

Accession MIMAT0031985
Description Danio rerio dre-miR-200b-5p mature miRNA
Sequence 13 - CAUCUUACGAGGCAGCAUUGGA - 34
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293