Stem-loop sequence dre-mir-193b

Accession

MI0002032 (change log)

Description

Danio rerio miR-193b stem-loop

Gene family

MIPF0000082; mir-193

Literature search

2 open access papers mention dre-mir-193b
(5 sentences)

Stem-loop

       - uu   uga          g    g  a  ag  uug 
5' guga u  cag   cgggacuuug gggc ag ug  ua   a
   |||| |  |||   |||||||||| |||| || ||  ||    
3' cacu a  guc   gcccugaaac cccg uc ac  au   u
       c gg   uuc          g    g  a  cu  cuc 

Deep sequencing

4648 reads, 200 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr3: 43714699-43714783 [+]
• Overlapping transcripts:

  sense

  OTTDART00000053888 ; si:ch73-156l6.2-001; intron 1

  ENSDART00000155441 ; si:ch73-156l6.2-001; intron 1

Clustered miRNAs

< 10kb from dre-mir-193b

• dre-mir-193b: chr3: 43714699-43714783 [+]
• dre-mir-365-1: chr3: 43716827-43716915 [+]

Database links

• EntrezGene:mir193b
• EntrezGene:mir193b
• RNAcentral:URS000075EA44_7955
• miRBase Tracker:MI0002032

Mature sequence dre-miR-193b-5p

• Accession: MIMAT0031982
• Sequence: 14 - cgggacuuugggggcgagaug - 34
• Deep sequencing: 1529 reads, 11 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000766554_7955

Mature sequence dre-miR-193b-3p

• Accession: MIMAT0001857
• Previous IDs: dre-miR-193b
• Sequence: 52 - aacuggcccgcaaagucccgcu - 73
• Deep sequencing: 3104 reads, 10 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075B418_7955
• Predicted targets:
  • TargetScanFish:dre-miR-193b

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).