miRBase entry: dre-mir-193b

Stem-loop dre-mir-193b


Accession
MI0002032
Description
Danio rerio dre-mir-193b precursor miRNA
Gene family
MIPF0000082; mir-193

Literature search
2 open access papers mention dre-mir-193b
(5 sentences)

Sequence

3544 reads, 292 reads per million, 11 experiments
gugauuucagugaCGGGACUUUGGGGGCGAGAUGaguauugaucucuauccAACUGGCCCGCAAAGUCCCGCUucugggacucac
((((((((((...((((((((((.((((.((.((.(((........))).)).)).)))).))))))))))...)))))).))))

Structure
    -      uga          G    G  A  a   uug 
guga uuucag   CGGGACUUUG GGGC AG UG gua   a
|||| ||||||   |||||||||| |||| || || |||    
cacu aggguc   GCCCUGAAAC CCCG UC Ac uau   u
    c      uUC          G    G  A  c   cuc 


Annotation confidence High
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Genome context
chr3: 43714699-43714783 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-193b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-193b-3p

Accession MIMAT0001857
Description Danio rerio dre-miR-193b-3p mature miRNA
Sequence 52 - AACUGGCCCGCAAAGUCCCGCU - 73
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-193b-5p

Accession MIMAT0031982
Description Danio rerio dre-miR-193b-5p mature miRNA
Sequence 14 - CGGGACUUUGGGGGCGAGAUG - 34
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293