miRBase entry: dre-mir-143

Stem-loop dre-mir-143


Accession
MI0002007
Description
Danio rerio dre-mir-143 precursor miRNA
Gene family
MIPF0000094; mir-143

Literature search
7 open access papers mention dre-mir-143
(17 sentences)

Sequence

32255 reads, 2055 reads per million, 11 experiments
gaucuacagucgucuggcccgcggugcagugcugcaucucuggucaacugggagucUGAGAUGAAGCACUGUAGCUCgggaggacaacacugucagcuc
((.(((((((.((((..((((.(.(((((((((.((((((.((((......)).)).)))))).))))))))).).)))).))))...))))).)).))

Structure
  u  -     --c    gg    c g         g      u  -  aa 
ga cu acagu   gucu  cccg g ugcagugcu caucuc gg uc  c
|| || |||||   ||||  |||| | ||||||||| |||||| || ||   
cu ga uguca   cagg  gggC C AUGUCACGA GUAGAG cu ag  u
  c  c     caa    -a    U G         A      U  g  gg 


Annotation confidence Not enough data
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Comments
The cloned mature miR-143 sequence always appears to be 22nt in length, modified by the addition of a 3' U residue not found in the genomic sequence [1].

Genome context
chr14: 38742313-38742411 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-143
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-143

Accession MIMAT0001840
Description Danio rerio dre-miR-143 mature miRNA
Sequence 57 - UGAGAUGAAGCACUGUAGCUC - 77
Evidence experimental
cloned [1]

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293